I am a PhD student working with with Dr. Paul Medvedev at the Department of Computer Science and Engineering, Pennsylvania State University. Before joining Penn State, I obtained my Bachelor’s degree in Computer Science and Engineering from Bangladesh University of Engineering and Technology (BUET).
My most recent CV can be found here (last updated on July 7, 2020).
Disk compression of k-mer sets.
Amatur Rahman, Rayan Chikhi and Paul Medvedev. WABI 2020 (accepted)
Representation of k-mer sets using spectrum-preserving string sets.
Amatur Rahman and Paul Medvedev. RECOMB 2020, LNCS 12074:152-168. (Best Paper Award) [preprint]
kRISP-meR: A Reference-free Guide-RNA Design Tool for CRISPR/Cas9.
Mahmudur Rahman Hera, Amatur Rahman and Atif Hasan Rahman. bioRxiv, 2019
An Adaptive IoT Platform on Budgeted 3G Data Plans.
Mahmudur Rahman Hera, Amatur Rahman, Hua-Jun Hong, Li-Wen Pan, Md. Yusuf Sarwar Uddin, Nalini Venkatasubramanian, Cheng-Hsin Hsu. Elsevier Journal of Systems Architecture, 2018
Adaptive Sensing Using Internet-of-Things with Constrained Communications.
Mahmudur Rahman Hera, Hua-Jun Hong, Amatur Rahman, Pei-Hsuan Tsai, Afia Afrin, Md. Yusuf Sarwar Uddin, Nalini Venkatasubramanian, Cheng-Hsin Hsu. In Proceedings of Adaptive and Reflexive Middleware, ACM, Las Vegas, Nevada, USA, 2017
AQBox: An Air Quality Measuring Box from COTS Gas Sensors.
Mahmudur Rahman Hera, Amatur Rahman, Afia Afrin, Md. Yusuf Sarwar Uddin, and Nalini Venkatasubramanian. In Proceedings of 2017 International Conference on Networking, Systems and Security (NSysS), Dhaka, Bangladesh, 2017
- Representation of k-mer sets using spectrum-preserving string sets
- RECOMB 2020 (virtual conference)
- Weekly Wednesday Wartik Genomics Lecture Series (WWWGLS) by CCBB, Penn State.
- ESS-Compress: compresses a set of k-mers for disk storage
- UST: build a spectrum-preserving string set representation of a set of k-mers
Email : aur1111 “at” psu “dot” edu